trimmed_fastq

Loading report..

Highlight Samples

Regex mode off

    Rename Samples

    Click here for bulk input.

    Paste two columns of a tab-delimited table here (eg. from Excel).

    First column should be the old name, second column the new name.

    Regex mode off

      Show / Hide Samples

      Regex mode off

        Export Plots

        px
        px
        X

        Download the raw data used to create the plots in this report below:

        Note that additional data was saved in 032_multiqc_mouseMT_trimmed_data when this report was generated.

        Choose Plots

        If you use plots from MultiQC in a publication or presentation, please cite:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        Save Settings

        You can save the toolbox settings for this report to the browser.

        Load Settings

        Choose a saved report profile from the dropdown box below:

        Tool Citations

        Please remember to cite the tools that you use in your analysis.

        To help with this, you can download publication details of the tools mentioned in this report:

        About MultiQC

        This report was generated using MultiQC, version 1.14

        You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

        For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

        You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/ewels/MultiQC

        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        trimmed_fastq

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2023-07-19, 09:33 CEST based on data in: /home/wandrille/Documents/trainingProjects/Introduction_to_RNAseq/toy_rnaseq_dataset/030_trim

        General Statistics

        Showing 8/8 rows.
        Sample Name% Dropped
        sample_a1
        0.2%
        sample_a2
        0.2%
        sample_a3
        0.2%
        sample_a4
        1.9%
        sample_b1
        0.2%
        sample_b2
        0.2%
        sample_b3
        0.2%
        sample_b4
        0.2%

        Trimmomatic

        Trimmomatic is a flexible read trimming tool for Illumina NGS data.DOI: 10.1093/bioinformatics/btu170.

        loading..

        MultiQC v1.14 - Written by Phil Ewels, available on GitHub.

        This report uses HighCharts, jQuery, jQuery UI, Bootstrap, FileSaver.js and clipboard.js.